Böcker i Synthesis Lectures on Data, Semantics, and Knowledge-serien

The book synthesizes research on the analysis of biomedical ontologies using formal concept analysis, including through auditing, curation, and enhancement. As the evolution of biomedical ontologies almost inevitably involves manual work, formal methods are a particularly useful tool for ontological engineering and practice, particularly in uncovering unexpected "e;bugs"e; and content materials.  The book first introduces simple but formalized strategies for discovering undesired and incoherent patterns in ontologies before exploring the application of formal concept analysis for semantic completeness. The book then turns to formal concept analysis, a classical approach used in the mathematical treatment of orders and lattices, as an ontological engineering principle, focusing on the structural property of ontologies with respect to its conformation to lattice or not (non-lattice). The book helpfully covers the development of more efficient algorithms for non-lattice detection and extraction required by exhaustive lattice/non-lattice analysis. The book goes on to highlight the power and utility of uncovering non-lattice structure for debugging ontologies and describes methods that leverage the linguistic information in concept names (labels) for ontological analysis. It also addresses visualization and performance evaluation issues before closing with an overview and forward-looking perspectives on the field.  This book is intended for graduate students and researchers interested in biomedical ontologies and their applications. It can be a useful supplement for courses on knowledge representation and engineering and also provide readers with a reference for related scientific publications and literature to assist in identifying potential research topics. All mathematical concepts and notations used in this book can be found in standard discrete mathematics textbooks, and the appendix at the end of the book provides a list of key ontological resources, as well as annotated non-lattice and lattice examples that were discovered using the authors' methods, demonstrating how "e;bugs are fixed"e; by converting non-lattices to lattices with minimal edit changes.

This book explains the ideas behind one of the most well-known methods for knowledge graph embedding of transformations to compute vector representations from a graph, known as RDF2vec. The authors describe its usage in practice, from reusing pre-trained knowledge graph embeddings to training tailored vectors for a knowledge graph at hand. They also demonstrate different extensions of RDF2vec and how they affect not only the downstream performance, but also the expressivity of the resulting vector representation, and analyze the resulting vector spaces and the semantic properties they encode.

Linked Data (LD) is a well-established standard for publishing and managing structured information on the Web, gathering and bridging together knowledge from different scientific and commercial domains. The development of Linked Data Visualization techniques and tools has been followed as the primary means for the analysis of this vast amount of information by data scientists, domain experts, business users, and citizens.This book covers a wide spectrum of visualization issues, providing an overview of the recent advances in this area, focusing on techniques, tools, and use cases of visualization and visual analysis of LD. It presents the basic concepts related to data visualization and the LD technologies, the techniques employed for data visualization based on the characteristics of data techniques for Big Data visualization, use tools and use cases in the LD context, and finally a thorough assessment of the usability of these tools under different scenarios.The purpose of this book is to offer a complete guide to the evolution of LD visualization for interested readers from any background and to empower them to get started with the visual analysis of such data. This book can serve as a course textbook or a primer for all those interested in LD and data visualization.

Ontologies have become increasingly important as the use of knowledge graphs, machine learning, natural language processing (NLP), and the amount of data generated on a daily basis has exploded. As of 2014, 90% of the data in the digital universe was generated in the two years prior, and the volume of data was projected to grow from 3.2 zettabytes to 40 zettabytes in the next six years. The very real issues that government, research, and commercial organizations are facing in order to sift through this amount of information to support decision-making alone mandate increasing automation. Yet, the data profiling, NLP, and learning algorithms that are ground-zero for data integration, manipulation, and search provide less than satisfactory results unless they utilize terms with unambiguous semantics, such as those found in ontologies and well-formed rule sets. Ontologies can provide a rich "e;schema"e; for the knowledge graphs underlying these technologies as well as the terminological and semantic basis for dramatic improvements in results. Many ontology projects fail, however, due at least in part to a lack of discipline in the development process. This book, motivated by the Ontology 101 tutorial given for many years at what was originally the Semantic Technology Conference (SemTech) and then later from a semester-long university class, is designed to provide the foundations for ontology engineering. The book can serve as a course textbook or a primer for all those interested in ontologies.

This book introduces core natural language processing (NLP) technologies to non-experts in an easily accessible way, as a series of building blocks that lead the user to understand key technologies, why they are required, and how to integrate them into Semantic Web applications. Natural language processing and Semantic Web technologies have different, but complementary roles in data management. Combining these two technologies enables structured and unstructured data to merge seamlessly. Semantic Web technologies aim to convert unstructured data to meaningful representations, which benefit enormously from the use of NLP technologies, thereby enabling applications such as connecting text to Linked Open Data, connecting texts to each other, semantic searching, information visualization, and modeling of user behavior in online networks. The first half of this book describes the basic NLP processing tools: tokenization, part-of-speech tagging, and morphological analysis, in addition to the main tools required for an information extraction system (named entity recognition and relation extraction) which build on these components. The second half of the book explains how Semantic Web and NLP technologies can enhance each other, for example via semantic annotation, ontology linking, and population. These chapters also discuss sentiment analysis, a key component in making sense of textual data, and the difficulties of performing NLP on social media, as well as some proposed solutions. The book finishes by investigating some applications of these tools, focusing on semantic search and visualization, modeling user behavior, and an outlook on the future.

The dramatic progress of smartphone technologies has ushered in a new era of mobile sensing, where traditional wearable on-body sensors are being rapidly superseded by various embedded sensors in our smartphones. For example, a typical smartphone today, has at the very least a GPS, WiFi, Bluetooth, triaxial accelerometer, and gyroscope. Alongside, new accessories are emerging such as proximity, magnetometer, barometer, temperature, and pressure sensors. Even the default microphone can act as an acoustic sensor to track noise exposure for example. These sensors act as a "e;"e;lens"e;"e; to understand the user's context along different dimensions. Data can be passively collected from these sensors without interrupting the user. As a result, this new era of mobile sensing has fueled significant interest in understanding what can be extracted from such sensor data both instantaneously as well as considering volumes of time series from these sensors. For example, GPS logs can be used to determine automatically the significant places associated to a user's life (e.g., home, office, shopping areas). The logs may also reveal travel patterns, and how a user moves from one place to another (e.g., driving or using public transport). These may be used to proactively inform the user about delays, relevant promotions from shops, in his "e;"e;regular"e;"e; route. Similarly, accelerometer logs can be used to measure a user's average walking speed, compute step counts, gait identification, and estimate calories burnt per day. The key objective is to provide better services to end users. The objective of this book is to inform the reader of the methodologies and techniques for extracting meaningful information (called "e;"e;semantics"e;"e;) from sensors on our smartphones. These techniques form the cornerstone of several application areas utilizing smartphone sensor data. We discuss technical challenges and algorithmic solutions for modeling and mining knowledge from smartphone-resident sensor data streams. This book devotes two chapters to dive deep into a set of highly available, commoditized sensors---the positioning sensor (GPS) and motion sensor (accelerometer). Furthermore, this book has a chapter devoted to energy-efficient computation of semantics, as battery life is a major concern on user experience.

While many Web 2.0-inspired approaches to semantic content authoring do acknowledge motivation and incentives as the main drivers of user involvement, the amount of useful human contributions actually available will always remain a scarce resource. Complementarily, there are aspects of semantic content authoring in which automatic techniques have proven to perform reliably, and the added value of human (and collective) intelligence is often a question of cost and timing. The challenge that this book attempts to tackle is how these two approaches (machine- and human-driven computation) could be combined in order to improve the cost-performance ratio of creating, managing, and meaningfully using semantic content. To do so, we need to first understand how theories and practices from social sciences and economics about user behavior and incentives could be applied to semantic content authoring. We will introduce a methodology to help software designers to embed incentives-minded functionalities into semantic applications, as well as best practices and guidelines. We will present several examples of such applications, addressing tasks such as ontology management, media annotation, and information extraction, which have been built with these considerations in mind. These examples illustrate key design issues of incentivized Semantic Web applications that might have a significant effect on the success and sustainable development of the applications: the suitability of the task and knowledge domain to the intended audience, and the mechanisms set up to ensure high-quality contributions, and extensive user involvement. Table of Contents: Semantic Data Management: A Human-driven Process / Fundamentals of Motivation and Incentives / Case Study: Motivating Employees to Annotate Content / Case Study: Building a Community of Practice Around Web Service Management and Annotation / Case Study: Games with a Purpose for Semantic Content Creation / Conclusions

The world of scholarship is changing rapidly. Increasing demands on scholars, the growing size and complexity of questions and problems to be addressed, and advances in sophistication of data collection, analysis, and presentation require new approaches to scholarship. A ubiquitous, open information infrastructure for scholarship, consisting of linked open data, open-source software tools, and a community committed to sustainability are emerging to meet the needs of scholars today. This book provides an introduction to VIVO, http://vivoweb.org/, a tool for representing information about research and researchers -- their scholarly works, research interests, and organizational relationships. VIVO provides an expressive ontology, tools for managing the ontology, and a platform for using the ontology to create and manage linked open data for scholarship and discovery. Begun as a project at Cornell and further developed by an NIH funded consortium, VIVO is now being established as an open-source project with community participation from around the world. By the end of 2012, over 20 countries and 50 organizations will provide information in VIVO format on more than one million researchers and research staff, including publications, research resources, events, funding, courses taught, and other scholarly activity. The rapid growth of VIVO and of VIVO-compatible data sources speaks to the fundamental need to transform scholarship for the 21st century. Table of Contents: Scholarly Networking Needs and Desires / The VIVO Ontology / Implementing VIVO and Filling It with Life / Case Study: University of Colorado at Boulder / Case Study: Weill Cornell Medical College / Extending VIVO / Analyzing and Visualizing VIVO Data / The Future of VIVO: Growing the Community

The World Wide Web has enabled the creation of a global information space comprising linked documents. As the Web becomes ever more enmeshed with our daily lives, there is a growing desire for direct access to raw data not currently available on the Web or bound up in hypertext documents. Linked Data provides a publishing paradigm in which not only documents, but also data, can be a first class citizen of the Web, thereby enabling the extension of the Web with a global data space based on open standards - the Web of Data. In this Synthesis lecture we provide readers with a detailed technical introduction to Linked Data. We begin by outlining the basic principles of Linked Data, including coverage of relevant aspects of Web architecture. The remainder of the text is based around two main themes - the publication and consumption of Linked Data. Drawing on a practical Linked Data scenario, we provide guidance and best practices on: architectural approaches to publishing Linked Data; choosing URIs and vocabularies to identify and describe resources; deciding what data to return in a description of a resource on the Web; methods and frameworks for automated linking of data sets; and testing and debugging approaches for Linked Data deployments. We give an overview of existing Linked Data applications and then examine the architectures that are used to consume Linked Data from the Web, alongside existing tools and frameworks that enable these. Readers can expect to gain a rich technical understanding of Linked Data fundamentals, as the basis for application development, research or further study. Table of Contents: List of Figures / Introduction / Principles of Linked Data / The Web of Data / Linked Data Design Considerations / Recipes for Publishing Linked Data / Consuming Linked Data / Summary and Outlook

This book provides a comprehensive and accessible introduction to knowledge graphs, which have recently garnered notable attention from both industry and academia. Knowledge graphs are founded on the principle of applying a graph-based abstraction to data, and are now broadly deployed in scenarios that require integrating and extracting value from multiple, diverse sources of data at large scale. The book defines knowledge graphs and provides a high-level overview of how they are used. It presents and contrasts popular graph models that are commonly used to represent data as graphs, and the languages by which they can be queried before describing how the resulting data graph can be enhanced with notions of schema, identity, and context. The book discusses how ontologies and rules can be used to encode knowledge as well as how inductive techniques-based on statistics, graph analytics, machine learning, etc.-can be used to encode and extract knowledge. It covers techniques for the creation, enrichment, assessment, and refinement of knowledge graphs and surveys recent open and enterprise knowledge graphs and the industries or applications within which they have been most widely adopted. The book closes by discussing the current limitations and future directions along which knowledge graphs are likely to evolve. This book is aimed at students, researchers, and practitioners who wish to learn more about knowledge graphs and how they facilitate extracting value from diverse data at large scale. To make the book accessible for newcomers, running examples and graphical notation are used throughout. Formal definitions and extensive references are also provided for those who opt to delve more deeply into specific topics.

This book describes a set of methods, architectures, and tools to extend the data pipeline at the disposal of developers when they need to publish and consume data from Knowledge Graphs (graph-structured knowledge bases that describe the entities and relations within a domain in a semantically meaningful way) using SPARQL, Web APIs, and JSON. To do so, it focuses on the paradigmatic cases of two middleware software packages, grlc and SPARQL Transformer, which automatically build and run SPARQL-based REST APIs and allow the specification of JSON schema results, respectively. The authors highlight the underlying principles behind these technologies-query management, declarative languages, new levels of indirection, abstraction layers, and separation of concerns-, explain their practical usage, and describe their penetration in research projects and industry. The book, therefore, serves a double purpose: to provide a sound and technical description of tools and methods at the disposal of publishers and developers to quickly deploy and consume Web Data APIs on top of Knowledge Graphs; and to propose an extensible and heterogeneous Knowledge Graph access infrastructure that accommodates a growing ecosystem of querying paradigms.

This book is a guide to designing and building knowledge graphs from enterprise relational databases in practice.\ It presents a principled framework centered on mapping patterns to connect relational databases with knowledge graphs, the roles within an organization responsible for the knowledge graph, and the process that combines data and people. The content of this book is applicable to knowledge graphs being built either with property graph or RDF graph technologies. Knowledge graphs are fulfilling the vision of creating intelligent systems that integrate knowledge and data at large scale. Tech giants have adopted knowledge graphs for the foundation of next-generation enterprise data and metadata management, search, recommendation, analytics, intelligent agents, and more. We are now observing an increasing number of enterprises that seek to adopt knowledge graphs to develop a competitive edge. In order for enterprises to design and build knowledge graphs, they need to understand the critical data stored in relational databases. How can enterprises successfully adopt knowledge graphs to integrate data and knowledge, without boiling the ocean? This book provides the answers.